{"id":"1","referenceSetId":"GRCh38","metadata":[{"id":"CIEND","number":"2","type":"Integer","info":{},"description":"Confidence interval around END for imprecise variants","key":"INFO"},{"id":"CIPOS","type":"Integer","info":{},"number":"2","description":"Confidence interval around POS for imprecise variants","key":"INFO"},{"key":"INFO","description":"Source call set.","number":"1","type":"String","info":{},"id":"CS"},{"key":"INFO","description":"End coordinate of this variant","number":"1","type":"Integer","info":{},"id":"END"},{"number":"0","info":{},"type":"Flag","id":"IMPRECISE","key":"INFO","description":"Imprecise structural variation"},{"id":"MC","number":".","type":"String","info":{},"description":"Merged calls.","key":"INFO"},{"info":{},"type":"String","number":"4","id":"MEINFO","key":"INFO","description":"Mobile element info of the form NAME,START,ENDPOLARITY; If there is only 5' OR 3' support for this call, will be NULL NULL for START and END"},{"description":"Mitochondrial end coordinate of inserted sequence","key":"INFO","id":"MEND","number":"1","info":{},"type":"Integer"},{"info":{},"type":"Integer","number":"1","id":"MLEN","key":"INFO","description":"Estimated length of mitochondrial insert"},{"number":"1","type":"Integer","info":{},"id":"MSTART","key":"INFO","description":"Mitochondrial start coordinate of inserted sequence"},{"key":"INFO","description":"Difference in length between REF and ALT alleles","info":{},"type":"Integer","number":".","id":"SVLEN"},{"key":"INFO","description":"Type of structural variant","number":"1","type":"String","info":{},"id":"SVTYPE"},{"description":"Precise Target Site Duplication for bases, if unknown, value will be NULL","key":"INFO","id":"TSD","info":{},"type":"String","number":"1"},{"type":"Integer","info":{},"number":"A","id":"AC","key":"INFO","description":"Total number of alternate alleles in called genotypes"},{"description":"Estimated allele frequency in the range (0,1)","key":"INFO","id":"AF","type":"Float","info":{},"number":"A"},{"key":"INFO","description":"Number of samples with data","number":"1","info":{},"type":"Integer","id":"NS"},{"description":"Total number of alleles in called genotypes","key":"INFO","id":"AN","number":"1","info":{},"type":"Integer"},{"info":{},"type":"Float","number":"A","id":"EAS_AF","key":"INFO","description":"Allele frequency in the EAS populations calculated from AC and AN, in the range (0,1)"},{"key":"INFO","description":"Allele frequency in the EUR populations calculated from AC and AN, in the range (0,1)","info":{},"type":"Float","number":"A","id":"EUR_AF"},{"id":"AFR_AF","number":"A","info":{},"type":"Float","description":"Allele frequency in the AFR populations calculated from AC and AN, in the range (0,1)","key":"INFO"},{"key":"INFO","description":"Allele frequency in the AMR populations calculated from AC and AN, in the range (0,1)","type":"Float","info":{},"number":"A","id":"AMR_AF"},{"id":"SAS_AF","type":"Float","info":{},"number":"A","description":"Allele frequency in the SAS populations calculated from AC and AN, in the range (0,1)","key":"INFO"},{"description":"Total read depth","key":"INFO","id":"DP","number":"1","info":{},"type":"Integer"},{"number":"A","type":"String","info":{},"id":"ssID","key":"INFO","description":"dbSNP ssID of the allele"},{"key":"INFO","description":"The transformationm for dbSNP results in different POS for the alleles on this line","number":"0","type":"Flag","info":{},"id":"TRANSFORM_TO_DIFFERENT_POS"},{"description":"Is Assembly specific. This is set if the variant only maps to one assembly (dbSNP flag)","key":"INFO","id":"ASP","number":"0","type":"Flag","info":{}},{"description":"Weight, 00 - unmapped, 1 - weight 1, 2 - weight 2, 3 - weight 3 or more (dbSNP flag)","key":"INFO","id":"WGT","number":"1","type":"Integer","info":{}},{"info":{},"type":"Flag","number":"0","id":"RV","key":"INFO","description":"RS orientation is reversed (dbSNP flag)"},{"id":"WGT_ref_RS","type":"String","info":{},"number":"1","description":"rsID to which the remapping of INFO flag WGT relates","key":"INFO"},{"description":"The REF cannot be resolved between builds","key":"INFO","id":"ERR_REF","number":"0","type":"Flag","info":{}},{"number":"0","info":{},"type":"Flag","id":"MATCHED_REV","key":"INFO","description":"The REF matched the - strand in GRCh38"},{"id":"MATCHED_FWD","number":"0","type":"Flag","info":{},"description":"The REF matched the + strand in GRCh38","key":"INFO"},{"number":"0","type":"Flag","info":{},"id":"SWITCHED_REF","key":"INFO","description":"The REF and ALT have switched between GRCh37 and GRCh38"},{"key":"INFO","description":"The REF has changed to a non-PHASE3 ALT","type":"Flag","info":{},"number":"0","id":"REF_SWITCHED_TO_NON_PHASE3_ALT"},{"number":"0","info":{},"type":"Flag","id":"ALLELES_DIFFERENT_POS","key":"INFO","description":"dbSNP has different POS for ALTS on the same line"},{"id":"MISSED_ID","type":"Flag","info":{},"number":"0","description":"An ID has been missed in remapping","key":"INFO"},{"key":"INFO","description":"An ALT has been missed in remapping","number":"0","info":{},"type":"Flag","id":"MISSED_ALT"},{"key":"INFO","description":"The rs cannot be used to remap","info":{},"type":"Flag","number":"0","id":"NO_RS_TO_MAP_TO"},{"description":"Genotype","key":"FORMAT","id":"GT","info":{},"type":"String","number":"1"}],"datasetId":"6e340c4d1e333c7a676b1710d2e3953c","name":"1000 Genomes phase3:GRCh38"}