{"referenceSetId":"GRCh38","metadata":[{"description":"Confidence interval around END for imprecise variants","key":"INFO","id":"CIEND","type":"Integer","info":{},"number":"2"},{"description":"Confidence interval around POS for imprecise variants","key":"INFO","id":"CIPOS","number":"2","type":"Integer","info":{}},{"id":"CS","type":"String","info":{},"number":"1","description":"Source call set.","key":"INFO"},{"description":"End coordinate of this variant","key":"INFO","id":"END","info":{},"type":"Integer","number":"1"},{"key":"INFO","description":"Imprecise structural variation","type":"Flag","info":{},"number":"0","id":"IMPRECISE"},{"id":"MC","type":"String","info":{},"number":".","description":"Merged calls.","key":"INFO"},{"description":"Mobile element info of the form NAME,START,ENDPOLARITY; If there is only 5' OR 3' support for this call, will be NULL NULL for START and END","key":"INFO","id":"MEINFO","number":"4","info":{},"type":"String"},{"type":"Integer","info":{},"number":"1","id":"MEND","key":"INFO","description":"Mitochondrial end coordinate of inserted sequence"},{"type":"Integer","info":{},"number":"1","id":"MLEN","key":"INFO","description":"Estimated length of mitochondrial insert"},{"key":"INFO","description":"Mitochondrial start coordinate of inserted sequence","type":"Integer","info":{},"number":"1","id":"MSTART"},{"number":".","info":{},"type":"Integer","id":"SVLEN","key":"INFO","description":"Difference in length between REF and ALT alleles"},{"key":"INFO","description":"Type of structural variant","info":{},"type":"String","number":"1","id":"SVTYPE"},{"number":"1","info":{},"type":"String","id":"TSD","key":"INFO","description":"Precise Target Site Duplication for bases, if unknown, value will be NULL"},{"type":"Integer","info":{},"number":"A","id":"AC","key":"INFO","description":"Total number of alternate alleles in called genotypes"},{"key":"INFO","description":"Estimated allele frequency in the range (0,1)","type":"Float","info":{},"number":"A","id":"AF"},{"number":"1","info":{},"type":"Integer","id":"NS","key":"INFO","description":"Number of samples with data"},{"description":"Total number of alleles in called genotypes","key":"INFO","id":"AN","type":"Integer","info":{},"number":"1"},{"key":"INFO","description":"Allele frequency in the EAS populations calculated from AC and AN, in the range (0,1)","number":"A","type":"Float","info":{},"id":"EAS_AF"},{"number":"A","info":{},"type":"Float","id":"EUR_AF","key":"INFO","description":"Allele frequency in the EUR populations calculated from AC and AN, in the range (0,1)"},{"description":"Allele frequency in the AFR populations calculated from AC and AN, in the range (0,1)","key":"INFO","id":"AFR_AF","type":"Float","info":{},"number":"A"},{"info":{},"type":"Float","number":"A","id":"AMR_AF","key":"INFO","description":"Allele frequency in the AMR populations calculated from AC and AN, in the range (0,1)"},{"description":"Allele frequency in the SAS populations calculated from AC and AN, in the range (0,1)","key":"INFO","id":"SAS_AF","type":"Float","info":{},"number":"A"},{"info":{},"type":"Integer","number":"1","id":"DP","key":"INFO","description":"Total read depth"},{"key":"INFO","description":"dbSNP ssID of the allele","number":"A","info":{},"type":"String","id":"ssID"},{"id":"TRANSFORM_TO_DIFFERENT_POS","type":"Flag","info":{},"number":"0","description":"The transformationm for dbSNP results in different POS for the alleles on this line","key":"INFO"},{"number":"0","type":"Flag","info":{},"id":"ASP","key":"INFO","description":"Is Assembly specific. This is set if the variant only maps to one assembly (dbSNP flag)"},{"key":"INFO","description":"Weight, 00 - unmapped, 1 - weight 1, 2 - weight 2, 3 - weight 3 or more (dbSNP flag)","number":"1","type":"Integer","info":{},"id":"WGT"},{"id":"RV","type":"Flag","info":{},"number":"0","description":"RS orientation is reversed (dbSNP flag)","key":"INFO"},{"type":"String","info":{},"number":"1","id":"WGT_ref_RS","key":"INFO","description":"rsID to which the remapping of INFO flag WGT relates"},{"id":"ERR_REF","type":"Flag","info":{},"number":"0","description":"The REF cannot be resolved between builds","key":"INFO"},{"type":"Flag","info":{},"number":"0","id":"MATCHED_REV","key":"INFO","description":"The REF matched the - strand in GRCh38"},{"info":{},"type":"Flag","number":"0","id":"MATCHED_FWD","key":"INFO","description":"The REF matched the + strand in GRCh38"},{"id":"SWITCHED_REF","type":"Flag","info":{},"number":"0","description":"The REF and ALT have switched between GRCh37 and GRCh38","key":"INFO"},{"key":"INFO","description":"The REF has changed to a non-PHASE3 ALT","number":"0","info":{},"type":"Flag","id":"REF_SWITCHED_TO_NON_PHASE3_ALT"},{"key":"INFO","description":"dbSNP has different POS for ALTS on the same line","type":"Flag","info":{},"number":"0","id":"ALLELES_DIFFERENT_POS"},{"id":"MISSED_ID","type":"Flag","info":{},"number":"0","description":"An ID has been missed in remapping","key":"INFO"},{"key":"INFO","description":"An ALT has been missed in remapping","info":{},"type":"Flag","number":"0","id":"MISSED_ALT"},{"description":"The rs cannot be used to remap","key":"INFO","id":"NO_RS_TO_MAP_TO","info":{},"type":"Flag","number":"0"},{"number":"1","type":"String","info":{},"id":"GT","key":"FORMAT","description":"Genotype"}],"id":"1","name":"1000 Genomes phase3:GRCh38","datasetId":"6e340c4d1e333c7a676b1710d2e3953c"}